PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_011080023.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Pedaliaceae; Sesamum
Family LBD
Protein Properties Length: 188aa    MW: 20728.9 Da    PI: 8.3602
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_011080023.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260121.74e-3881091101
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 
                     +C aCk+lrrkCa+dC++apyf +eq p++fa++hk+FGasnv+kll ++p  +r +a+ +++yeA+ar+rdP+yG+v+++++lqqq++ l+a++
  XP_011080023.1   8 PCGACKFLRRKCAADCIFAPYFWSEQgPARFAAIHKVFGASNVSKLLLHVPVPDRCEAVFTIAYEAQARIRDPIYGCVAHMFALQQQVAYLEAQV 102
                     7*********************999989******************************************************************* PP

          DUF260  95 allkeel 101
                      ++k++l
  XP_011080023.1 103 MQVKAQL 109
                     9999875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089122.6877109IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-378106IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010311Biological Processlateral root formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MATGTGSPCG ACKFLRRKCA ADCIFAPYFW SEQGPARFAA IHKVFGASNV SKLLLHVPVP  60
DRCEAVFTIA YEAQARIRDP IYGCVAHMFA LQQQVAYLEA QVMQVKAQLA RNMIDESSRN  120
AEINEWPMSS VAGGIIGSSP VTTLNYNVNY SIAPPQSVMR EPYSKKRPPQ TDLSELQELA  180
LAMIKNQN
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00309DAPTransfer from AT2G42430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011080023.11e-140PREDICTED: LOB domain-containing protein 16-like
SwissprotQ9SLB71e-68LBD16_ARATH; LOB domain-containing protein 16
TrEMBLA0A068U6E52e-86A0A068U6E5_COFCA; Uncharacterized protein
STRINGPOPTR_0005s24320.13e-77(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42430.16e-70lateral organ boundaries-domain 16